Information for 4-TTGGGTGGAT (Motif 9)

A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T
Reverse Opposite:
C G T A A C G T A G T C A G T C C G T A A G T C A G T C A G T C C G T A C T G A
p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.891
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif7.32%
Number of Background Sequences with motif40.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets57.7 +/- 30.1bp
Average Position of motif in Background52.5 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:TTGGGTGGAT
----GTGGAT
 A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TTGGGTGGAT
CTTGAGTGGCT
 A C G T A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TTGGGTGGAT----
GTATTGGGTGGGTAATT
 A C G T A C G T A C G T A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTGGGTGGAT---
-NNTGTGGATTSS
 A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T A C G T A C G T A C G T
A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTGGGTGGAT
TTRAGTGSYK
 A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PB0143.1_Klf7_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTGGGTGGAT----
NNNTNGGGCGTATNNTN
 A C G T A C G T A C G T A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTGGGTGGAT----
---TGTGGATTNNN
 A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTGGGTGGAT--
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTGGGTGGAT
TTGAGTGSTT
 A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTGGGTGGAT-
CGTGGGTGGTCC
 A C G T A G C T C G A T A C T G C T A G A C T G A C G T A C T G A C T G G T C A A C G T A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C