Information for 20-MTTCWKCAGCCMTGCT (Motif 29)

T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T
Reverse Opposite:
G C T A A T C G A G T C C G T A C A T G C T A G T A C G A T G C G C A T C T A G G T A C G C T A C T A G T G C A G T C A A C T G
p-value:1e-10
log p-value:-2.396e+01
Information Content per bp:1.653
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif27.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets54.9 +/- 30.1bp
Average Position of motif in Background57.2 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:MTTCWKCAGCCMTGCT---
-------CCCCCTGCTGTG
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:MTTCWKCAGCCMTGCT------
-------TCNCCTGCTGNGNNN
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:MTTCWKCAGCCMTGCT------
-------TNTCCTGCTGTGNNG
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.53
Offset:10
Orientation:forward strand
Alignment:MTTCWKCAGCCMTGCT----
----------CCTGCTGAGH
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:MTTCWKCAGCCMTGCT------
-------NNTCCTGCTGTGNNN
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:MTTCWKCAGCCMTGCT----
-----GGCCYCCTGCTGDGH
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:MTTCWKCAGCCMTGCT-
-----GCNGCCATCTTG
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:MTTCWKCAGCCMTGCT----
-----SCAGYCADGCATGAC
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

ZEB1/MA0103.2/Jaspar

Match Rank:9
Score:0.47
Offset:5
Orientation:forward strand
Alignment:MTTCWKCAGCCMTGCT
-----CCTCACCTG--
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T
A C G T A C G T A C G T A C G T A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.47
Offset:7
Orientation:forward strand
Alignment:MTTCWKCAGCCMTGCT
-------AGGCCTNG-
 T G A C A C G T A C G T A G T C C G A T A C T G G A T C C G T A A T C G A T G C G A T C G T A C A C G T T C A G T A G C C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T