Information for 2-CCTARTAAAA (Motif 2)

A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A
Reverse Opposite:
C A G T A C G T A C G T C G A T C G T A A G C T C G A T C T G A A T C G T A C G
p-value:1e-41
log p-value:-9.657e+01
Information Content per bp:1.705
Number of Target Sequences with motif160.0
Percentage of Target Sequences with motif21.48%
Number of Background Sequences with motif2921.6
Percentage of Background Sequences with motif6.27%
Average Position of motif in Targets49.8 +/- 26.8bp
Average Position of motif in Background50.4 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCTARTAAAA
NCYAATAAAA
 A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:CCTARTAAAA
CCYMATAAAA
 A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.90
Offset:1
Orientation:forward strand
Alignment:CCTARTAAAA-
-CCAATAAAAA
 A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CCTARTAAAA
NGCAATTAAA
 A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.88
Offset:1
Orientation:forward strand
Alignment:CCTARTAAAA-
-CCAATAAAAA
 A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.87
Offset:1
Orientation:forward strand
Alignment:CCTARTAAAA-
-CCAATAAAAC
 A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CCTARTAAAA----
AACCCAATAAAATTCG
 A C G T A C G T A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CCTARTAAAA--
NGYCATAAAWCH
 A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CCTARTAAAA----
CTACCAATAAAATTCT
 A C G T A C G T A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CCTARTAAAA-
GGTAATAAAAA
 A T G C T A G C A G C T G C T A C T G A A C G T G C T A C G T A C G T A G T C A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A