Information for 6-CTGTCATAAA (Motif 7)

A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A
Reverse Opposite:
A C G T A C G T A C G T G T C A A C G T A T C G C T G A A T G C C G T A T A C G
p-value:1e-14
log p-value:-3.307e+01
Information Content per bp:1.850
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif134.2
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets46.6 +/- 25.3bp
Average Position of motif in Background48.8 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.82
Offset:2
Orientation:forward strand
Alignment:CTGTCATAAA--
--GTCATAAAAN
 A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CTGTCATAAA--
--GTCGTAAAAT
 A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T A C G T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CTGTCATAAA-
--GCAATAAAA
 A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTGTCATAAA-
AAGCCATAAAA
 A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CTGTCATAAA----
TAAAGTCGTAAAACGT
 A C G T A C G T A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CTGTCATAAA---
-NGYCATAAAWCH
 A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CTGTCATAAA--
-GGTAATAAAAA
 A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTGTCATAAA----
AAAGGTAATAAAATTT
 A C G T A C G T A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

HOXD11/MA0908.1/Jaspar

Match Rank:9
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CTGTCATAAA--
--GTCGTAAAAA
 A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T A C G T
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTGTCATAAA----
TAAAGTCGTAAAATAG
 A C G T A C G T A T G C C G A T A T C G A G C T T A G C C G T A A C G T C G T A T G C A C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G