Information for 5-GGCAGCCAAR (Motif 5)

C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T C T A G A T C G A T G C G C A T A T C G T G A C G A T C
p-value:1e-16
log p-value:-3.763e+01
Information Content per bp:1.694
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif9.39%
Number of Background Sequences with motif1434.4
Percentage of Background Sequences with motif3.05%
Average Position of motif in Targets52.9 +/- 26.3bp
Average Position of motif in Background50.1 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GGCAGCCAAR
-CGTGCCAAG
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GGCAGCCAAR
---TGCCAA-
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GGCAGCCAAR-
-GGTGCCAAGT
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGCAGCCAAR
--TTGCCAAG
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGCAGCCAAR---
--AAGGCAAGTGT
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGCAGCCAAR
-BCAGACWA-
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GGCAGCCAAR---------
---TGCCAAAATAAACANN
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GGCAGCCAAR---
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGCAGCCAAR---
---AGCCAATCGG
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGCAGCCAAR
-GCTGTCAA-
 C T A G A C T G T A G C C G T A A T C G T A G C G A T C G T C A C G T A C T G A
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T