Information for 7-TTGGCAGCAG (Motif 11)

C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G
Reverse Opposite:
A G T C C A G T A C T G A T G C A C G T A C T G A G T C A G T C G T C A C G T A
p-value:1e-11
log p-value:-2.569e+01
Information Content per bp:1.904
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.54%
Number of Background Sequences with motif169.4
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets47.9 +/- 28.0bp
Average Position of motif in Background49.7 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAGCAG
NNTTGGCANN--
 A C G T A C G T C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCAGCAG
NTTGGCANN--
 A C G T C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTGGCAGCAG
TTGGCA----
 C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCAGCAG
CTTGGCAA---
 A C G T C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAGCAG
GGTTGGCAT---
 A C G T A C G T C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTGGCAGCAG
TTGACAGC--
 C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TTGGCAGCAG----
--AGCAGCTGCTNN
 C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Ascl2/MA0816.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TTGGCAGCAG--
--AGCAGCTGCT
 C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G A C G T A C G T
A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TTGGCAGCAG---
GATATTGACAGCTGCGT
 A C G T A C G T A C G T A C G T C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G A C G T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TTGGCAGCAG---
---NCAGCTGCTG
 C G A T A C G T A C T G A C T G A G T C C G T A A T C G G T A C G T C A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G