Information for 15-AGCACACMMTTSCCAG (Motif 25)

C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G
Reverse Opposite:
A G T C A C G T C T A G A C T G A T C G C G T A C T G A A C G T A C G T T A C G C G A T A C T G A G C T A C T G A G T C G A C T
p-value:1e-10
log p-value:-2.320e+01
Information Content per bp:1.717
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.8 +/- 21.4bp
Average Position of motif in Background52.8 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCACACMMTTSCCAG
AGCGGCACACACGCAA---
 A C G T A C G T A C G T C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCACACMMTTSCCAG
CGAAGCACACAAAATA---
 A C G T A C G T A C G T C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGCACACMMTTSCCAG
CCAGGAACAG---------
 A C G T A C G T A C G T C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGCACACMMTTSCCAG
CATAAGACCACCATTAC---
 A C G T A C G T A C G T A C G T C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.52
Offset:9
Orientation:forward strand
Alignment:AGCACACMMTTSCCAG-
---------TTGCCAAG
 C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGCACACMMTTSCCAG-----
-AACTACAATTCCCAGAATGC
 C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

GFY(?)/Promoter/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGCACACMMTTSCCAG
--ACTACAATTCCC--
 C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G
A C G T A C G T T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AGCACACMMTTSCCAG-----
-RACTACAACTCCCAGVAKGC
 C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-AGCACACMMTTSCCAG
NAGAACAGNCTGTNCT-
 A C G T C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A C G T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AGCACACMMTTSCCAG
---TCAGTCTT-----
 C T G A A C T G G T A C T C G A A G T C C G T A A T G C T G C A G T A C A G C T A C G T A T G C G T A C A G T C G T C A C T A G
A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T