Information for 6-GCCAAGKCAA (Motif 20)

A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A
Reverse Opposite:
A C G T C G A T A C T G G T A C A G T C C G A T A C G T C T A G A T C G A G T C
p-value:1e-10
log p-value:-2.457e+01
Information Content per bp:1.781
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.02%
Number of Background Sequences with motif229.3
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets50.8 +/- 27.3bp
Average Position of motif in Background49.0 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCCAAGKCAA--
TTGCCATGGCAACN
 A C G T A C G T A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCCAAGKCAA
-AAAAGTCAA
 A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCCAAGKCAA--
TTGCCATGGCAACC
 A C G T A C G T A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A A C G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAGKCAA---
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GCCAAGKCAA-
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGKCAA
CGTGCCAAG----
 A C G T A C G T A C G T A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGKCAA--
ATGCCACGTCATCA
 A C G T A C G T A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A A C G T A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGKCAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCCAAGKCAA----
---AAGGCAAGTGT
 A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

CREB3/MA0638.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGKCAA--
GTGCCACGTCATCA
 A C G T A C G T A C T G T A G C G A T C C G T A C G T A A C T G C A T G G T A C C G T A G T C A A C G T A C G T
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A