Information for 3-ACAMCAGCCCACCAGC (Motif 5)

C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C
Reverse Opposite:
A T C G A G T C A C G T A C T G A T C G A C G T A C T G C A T G A C T G T A G C A G C T A C T G A C T G C A G T A C T G A G C T
p-value:1e-12
log p-value:-2.969e+01
Information Content per bp:1.742
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.4 +/- 20.4bp
Average Position of motif in Background35.3 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:1
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ACAMCAGCCCACCAGC----
VCAKCTGGNNNCCAGMTGBN
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:ACAMCAGCCCACCAGC
----------CACAGN
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.52
Offset:7
Orientation:forward strand
Alignment:ACAMCAGCCCACCAGC---
-------CACAGCAGGGGG
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZEB1/MA0103.2/Jaspar

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:ACAMCAGCCCACCAGC
------CCTCACCTG-
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:ACAMCAGCCCACCAGC-----
------DCHCAGCAGGRGGCC
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.50
Offset:12
Orientation:forward strand
Alignment:ACAMCAGCCCACCAGC-
------------CAGCC
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:ACAMCAGCCCACCAGC
AAATGGACCAATCAG-
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:8
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--ACAMCAGCCCACCAGC
NRGCCCCRCCCHBNN---
 A C G T A C G T C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C
G A C T T C A G C T A G A G T C A G T C G T A C A G T C C T G A A G T C A G T C A G T C G A C T A G T C A C T G A T G C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.49
Offset:4
Orientation:forward strand
Alignment:ACAMCAGCCCACCAGC---
----CCACACAGCAGGAGA
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:ACAMCAGCCCACCAGC--
-CATAAGACCACCATTAC
 C T G A A G T C G C T A G T A C G T A C C T G A A T C G A G T C G A T C T A G C G T C A T A G C A G T C C G T A A C T G T A G C A C G T A C G T
A C G T A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T