Information for 5-CCTAGTTGCCTCT (Motif 10)

A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
Reverse Opposite:
C G T A C T A G C G T A A C T G C T A G A G T C C G T A C G T A G T A C A C G T C G T A C T A G A C T G
p-value:1e-10
log p-value:-2.527e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.4 +/- 26.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTAGTTGCCTCT
-NNACTTGCCTT-
 A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCTAGTTGCCTCT
TACCCTAGTTACCGA-
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTAGTTGCCTCT
ACTAGTTAAC---
 A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTAGTTGCCTCT-
GNNTTAATTGGTTGTT
 A C G T A C G T A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTAGTTGCCTCT
TGACCTARTT------
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCTAGTTGCCTCT
NNTAATTGNN---
 A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
T A C G A G T C C G A T T G C A T G C A A C G T A G C T C T A G T A C G A G C T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCTAGTTGCCTCT
---ATTTGCATAT
 A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Msx3/MA0709.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTAGTTGCCTCT
-NTAATTGN----
 A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
A C G T A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G A C G T A C G T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCTAGTTGCCTCT-
NNNTTAATTGGTTTTT
 A C G T A C G T A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTAGTTGCCTCT
-CTAATKGV----
 A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T A C G T