Information for 7-GGGCACTCTGCCA (Motif 8)

A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A
Reverse Opposite:
C A G T A C T G T C A G G T A C C G T A A T C G C T G A T A C G C A G T C A T G A G T C G T A C T G A C
p-value:1e-13
log p-value:-3.078e+01
Information Content per bp:1.679
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif69.6
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets39.7 +/- 20.6bp
Average Position of motif in Background49.9 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GGGCACTCTGCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GGGCACTCTGCCA-
TGGCAGNCTGCCAG
 A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GGGCACTCTGCCA-
TGGCACCATGCCAA
 A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGGCACTCTGCCA
NAGGTCACNNTGACC
 A C G T A C G T A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR2/MA0258.2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGGCACTCTGCCA-
AGGTCACCCTGACCT
 A C G T A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGGCACTCTGCCA
GTAGGTCACTGGGTCA
 A C G T A C G T A C G T A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:7
Orientation:forward strand
Alignment:GGGCACTCTGCCA--
-------TTGCCAAG
 A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GGGCACTCTGCCA--
------CGTGCCAAG
 A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GGGCACTCTGCCA---
-------CTGCCCGCA
 A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:GGGCACTCTGCCA-
--------TGCCAA
 A C T G A C T G A C T G G T A C G T C A A T G C G A C T T A G C C G A T A C T G A G T C G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A