Information for 18-CATCCTGGATGGGAGA (Motif 34)

A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A T G C A T G C A G T C C G T A A G C T A G T C G T A C C G T A A T C G A C T G C G T A A C G T A C T G
p-value:1e-8
log p-value:-2.019e+01
Information Content per bp:1.899
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.4 +/- 24.4bp
Average Position of motif in Background56.2 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0167.1_Sox13_2/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CATCCTGGATGGGAGA--
-GTATTGGGTGGGTAATT
 A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A A C G T A C G T
A C G T C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CATCCTGGATGGGAGA
ACATCCTGNT-------
 A C G T A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----CATCCTGGATGGGAGA
GATAACATCCTAGTAG-----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CATCCTGGATGGGAGA---
------AGGTGNCAGACAG
 A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CATCCTGGATGGGAGA
-----TGCGTGGGYG-
 A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CATCCTGGATGGGAGA--
------AGGTGHCAGACA
 A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CATCCTGGATGGGAGA
NNNNNATTGATGNGTGN
 A C G T A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

SPDEF/MA0686.1/Jaspar

Match Rank:8
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--CATCCTGGATGGGAGA
TACATCCGGGT-------
 A C G T A C G T A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CATCCTGGATGGGAGA
-ATGATKGATGRC---
 A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T

GLIS1/MA0735.1/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CATCCTGGATGGGAGA
GCTTCGTGGGGGGTCT-
 A C G T A G T C C G T A A C G T T A G C A T G C C G A T A C T G A C T G C T G A A C G T A C T G A T C G A T C G C G T A A C T G C G T A
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T A C G T