Information for 8-TCTATAAAGC (Motif 17)

A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C
Reverse Opposite:
C A T G A T G C G C A T A G C T G A C T C T G A C G A T C T G A T A C G T C G A
p-value:1e-12
log p-value:-2.814e+01
Information Content per bp:1.640
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.78%
Number of Background Sequences with motif1028.1
Percentage of Background Sequences with motif2.18%
Average Position of motif in Targets43.9 +/- 26.3bp
Average Position of motif in Background51.5 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCTATAAAGC------
-GTATAAAAGGCGGGG
 A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCTATAAAGC------
-GTATAAAAGGCGGGG
 A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAGC-
NGYCATAAAWCH
 A C G T A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCTATAAAGC---
CTACCAATAAAATTCT
 A C G T A C G T A C G T A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCTATAAAGC
CCAATAAAAC
 A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCTATAAAGC
CCAATAAAAA
 A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCTATAAAGC
GCAATAAAA-
 A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCTATAAAGC
AAGCCATAAAA-
 A C G T A C G T A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAGC--
GGCCATAAATCAC
 A C G T A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

MEF2A/MA0052.3/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCTATAAAGC--
TCTAAAAATAGA
 A G C T A T G C G A C T G C T A G A C T C T G A T C G A C G T A T A C G G T A C A C G T A C G T
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A