Information for 22-GCGGCACAAAGCC (Motif 30)

A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G C T A G A G T C A C G T A C G T A C G T A C T G A C G T A C T G A G T C A G T C A T C G A G T C
p-value:1e-5
log p-value:-1.247e+01
Information Content per bp:1.929
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.8 +/- 22.2bp
Average Position of motif in Background66.1 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GCGGCACAAAGCC
--GGAACAAAGR-
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCGGCACAAAGCC
--VRRACAAWGG-
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCGGCACAAAGCC
-----ACAAAG--
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCGGCACAAAGCC--
-TGGCACCATGCCAA
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCGGCACAAAGCC
--AAAACAAAGG-
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCGGCACAAAGCC----
-----ACAAAGGNBCCT
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCGGCACAAAGCC---
TTGGCANNNTGCCAAG
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCGGCACAAAGCC
----RACAAWGG-
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCGGCACAAAGCC--
-TGGCAGNCTGCCAG
 A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C A C G T A C G T
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCGGCACAAAGCC--
AGCGGCACACACGCAA
 A C G T A C T G A T G C A C T G C T A G A G T C C G T A T G A C C G T A C G T A C G T A A C T G A G T C A G T C A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A