Information for 5-TTTTATGAGC (Motif 3)

C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C
Reverse Opposite:
T A C G T G A C G A C T G T A C G C T A G A C T T G C A T G C A C T G A G C T A
p-value:1e-15
log p-value:-3.555e+01
Information Content per bp:1.652
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.54%
Number of Background Sequences with motif353.3
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets50.9 +/- 25.9bp
Average Position of motif in Background49.2 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGAGC---
NAATTTTACGAGNTNN
 A C G T A C G T A C G T C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TTTTATGAGC
TTTTATTRGN
 C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.85
Offset:0
Orientation:forward strand
Alignment:TTTTATGAGC
TTTTATKRGG
 C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGC
NTTTTACGAGN
 A C G T C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGC
NTTTTATTGG-
 A C G T C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGAGC---
ANATTTTACGAGNNNN
 A C G T A C G T A C G T C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGC
NTTTTACGAC-
 A C G T C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGC
NTTTTATGAC-
 A C G T C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGC
TTTTTATTGG-
 A C G T C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGAGC---
NAATTTTATTACCTNN
 A C G T A C G T A C G T C G A T G A C T A C G T A C G T C T G A C G A T C A T G C T G A A C T G A T G C A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A