Information for 12-AGACGAGTAT (Motif 19)

C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T
Reverse Opposite:
C G T A C A G T C G T A A T G C A C G T G T A C T C A G A C G T A G T C A C G T
p-value:1e-9
log p-value:-2.274e+01
Information Content per bp:1.863
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif12.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets63.0 +/- 29.3bp
Average Position of motif in Background45.8 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGACGAGTAT----
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGACGAGTAT
AAGGCAAGTGT
 A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0108.1_Atf1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGACGAGTAT-
GAATGACGAATAAC
 A C G T A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGTAT
CCAGACRSVB--
 A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGTAT
BCAGACWA----
 A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGTAT
CCAGACAG----
 A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGTAT---
NNAGATNVNWATCTN
 A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T A C G T A C G T A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

Gata1/MA0035.3/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGTAT
ANAGATAAGAA-
 A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T

PB0023.1_Gata6_1/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AGACGAGTAT--
TATAGAGATAAGAATTG
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T A C G T A C G T
C G A T G T C A C G A T T G C A C A G T G C T A A C T G C G T A A G C T C G T A C G T A A T C G T G C A C T G A C G A T G C A T T C A G

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGTAT----
TTTTACGACTTTCCAT
 A C G T A C G T C G T A A C T G C G T A A G T C C A T G C G T A A T C G A C G T G C T A A C G T A C G T A C G T A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T