Information for 3-ATCCGTCGCCATC (Motif 4)

G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C
Reverse Opposite:
C T A G C G T A A C G T A C T G A C T G A G T C T A C G T C G A A G T C A C T G A C T G T C G A C A G T
p-value:1e-15
log p-value:-3.521e+01
Information Content per bp:1.812
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.8 +/- 30.1bp
Average Position of motif in Background54.5 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:ATCCGTCGCCATC---
----GCCGCCATCTTG
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATCCGTCGCCATC-
---GTCCGCCATTA
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T
A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ATCCGTCGCCATC---
----GCNGCCATCTTG
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:ATCCGTCGCCATC---
------GGCCATTAAC
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATCCGTCGCCATC---
-NCCGTTGCTANGNGN
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T
A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ATCCGTCGCCATC-----
--CGGTTGCCATGGCAAC
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:ATCCGTCGCCATC----
---NGTTGCCATGGCAA
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ATCCGTCGCCATC---
-NNCGTTGCTATGGNN
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T
A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:ATCCGTCGCCATC-----
----GTTGCCATGGNAAC
 G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0112.1_E2F2_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-ATCCGTCGCCATC---
CCTTCGGCGCCAAAAGG
 A C G T G C T A A G C T A G T C G T A C C T A G A G C T A T G C A C T G A G T C G T A C C G T A A C G T A G T C A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G