Information for 6-TCTGCGCTGTGCC (Motif 9)

A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C
Reverse Opposite:
T A C G A T C G A G T C C T G A T G A C G T C A A C T G G A T C A C T G T A G C C G T A A C T G C G T A
p-value:1e-12
log p-value:-2.793e+01
Information Content per bp:1.801
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.2 +/- 23.4bp
Average Position of motif in Background40.1 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TCTGCGCTGTGCC
-----GCTGTG--
 A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TCTGCGCTGTGCC
NNGCNCTGCGCGGC---
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TCTGCGCTGTGCC---
------CTGTTCCTGG
 A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TCTGCGCTGTGCC
GCTTCC-------
 A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TCTGCGCTGTGCC---
--TGACCTTTGCCCTA
 A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TCTGCGCTGTGCC
VBSYGTCTGG--------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TCTGCGCTGTGCC
-CTGACCTTTG--
 A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:TCTGCGCTGTGCC----
--TGACCTTTGCCCTAN
 A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:TCTGCGCTGTGCC
----NGCTN----
 A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TCTGCGCTGTGCC---
--TGACCTTTGCCCCA
 A C G T A G T C A C G T A C T G A G T C C T A G A G T C A C G T A C T G A G C T C T A G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A