Information for 5-GTGGTAATTA (Motif 6)

T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A
Reverse Opposite:
A G C T G C T A G T C A C G A T C A G T T C G A A T G C G A T C G T C A A T G C
p-value:1e-12
log p-value:-2.808e+01
Information Content per bp:1.679
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif173.2
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets46.5 +/- 21.8bp
Average Position of motif in Background49.8 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0031.1_Hoxa3_1/Jaspar

Match Rank:1
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GTGGTAATTA--
TGGAGGTAATTAAC
 A C G T A C G T T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

PH0053.1_Hoxa6/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GTGGTAATTA----
NTNAGGTAATTACCTT
 A C G T A C G T T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T A C G T A C G T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T

PH0050.1_Hoxa3/Jaspar

Match Rank:3
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GTGGTAATTA--
TTGAGGTAATTAGT
 A C G T A C G T T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T
C A G T A G C T T A C G G T C A T C A G A T C G A G C T G T C A G T C A A C G T A C G T C T G A T C A G A G C T

PH0072.1_Hoxc8/Jaspar

Match Rank:4
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GTGGTAATTA----
TTGGGGTAATTAACGT
 A C G T A C G T T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T A C G T A C G T
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T

Hoxb5/MA0904.1/Jaspar

Match Rank:5
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GTGGTAATTA----
ATGNGCTAATTANCNT
 A C G T A C G T T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T A C G T A C G T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

PH0060.1_Hoxb5/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GTGGTAATTA----
ATGNGCTAATTANCNT
 A C G T A C G T T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T A C G T A C G T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:7
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:GTGGTAATTA--
--GNTAATTAGN
 T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T
A C G T A C G T A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C

MEOX2/MA0706.1/Jaspar

Match Rank:8
Score:0.78
Offset:2
Orientation:forward strand
Alignment:GTGGTAATTA--
--AGTAATTAAC
 T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T
A C G T A C G T C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C

PH0020.1_Dlx1/Jaspar

Match Rank:9
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GTGGTAATTA--
CTGAGGTAATTAAT
 A C G T A C G T T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

EMX2/MA0886.1/Jaspar

Match Rank:10
Score:0.78
Offset:2
Orientation:forward strand
Alignment:GTGGTAATTA--
--GCTAATTAGC
 T A C G C A G T C T A G T A C G A G C T G T C A G C T A C A G T C G A T T C G A A C G T A C G T
A C G T A C G T T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C