Information for 9-GCCTTGCCTCTCT (Motif 12)

A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
Reverse Opposite:
C G T A A C T G C G T A C T A G C G T A C T A G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
p-value:1e-7
log p-value:-1.838e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.4 +/- 21.6bp
Average Position of motif in Background38.6 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTGCCTCTCT
NNACTTGCCTT---
 A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCCTTGCCTCTCT
BNTGDCCTTG-------
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCTTGCCTCTCT--
GTCATGCHTGRCTGS
 A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0180.1_Sp4_2/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GCCTTGCCTCTCT
NNGGCCACGCCTTTN-
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTGCCTCTCT
TGACCTTGAN-----
 A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCCTTGCCTCTCT
GGCCCCGCCCCC--
 A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTGCCTCTCT
TGACCTTGAV-----
 A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCCTTGCCTCTCT
-NCTTCCCGCCC-
 A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
A C G T A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T

SPIB/MA0081.1/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GCCTTGCCTCTCT
----TTCCTCT--
 A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCCTTGCCTCTCT
-ACTTTCGTTTCT
 A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T G T A C G C A T
A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T