Information for 9-TYTGGCACCG (Motif 7)

A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
Reverse Opposite:
T A G C C A T G C T A G C G A T A C T G A T G C A G T C C G T A T C A G G T C A
p-value:1e-10
log p-value:-2.523e+01
Information Content per bp:1.779
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif122.1
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets43.1 +/- 29.3bp
Average Position of motif in Background45.4 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TYTGGCACCG
NTTGGCANN-
 A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TYTGGCACCG
-TTGGCA---
 A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TYTGGCACCG
NNTTGGCANN-
 A C G T A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TYTGGCACCG
CTTGGCAA--
 A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TYTGGCACCG
GGTCTGGCAT--
 A C G T A C G T A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TYTGGCACCG
GGTTGGCAT--
 A C G T A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TYTGGCACCG----
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

PB0113.1_E2F3_2/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TYTGGCACCG----
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TYTGGCACCG
TGTCTGDCACCT
 A C G T A C G T A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TYTGGCACCG
CTGTCTGTCACCT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T C G A G T C G C T A G A T C G T A C A T C G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T