Information for 5-AAGTCTGGAAGCC (Motif 6)

G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
Reverse Opposite:
T A C G A C T G A G T C A C G T C G A T A T G C G T A C C T G A A C T G T C G A A G T C A C G T A C G T
p-value:1e-9
log p-value:-2.134e+01
Information Content per bp:1.815
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.8 +/- 23.3bp
Average Position of motif in Background40.6 +/- 5.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGTCTGGAAGCC
TWGTCTGV-----
 G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGTCTGGAAGCC
VBSYGTCTGG-----
 A C G T A C G T G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGTCTGGAAGCC
CTGTCTGG-----
 G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AAGTCTGGAAGCC
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AAGTCTGGAAGCC
-GGTCTGGCAT--
 G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AAGTCTGGAAGCC
-TGTCTGDCACCT
 G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AAGTCTGGAAGCC
AAAAGTCAA------
 A C G T A C G T G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AAGTCTGGAAGCC
------NGAAGC-
 G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AAGTCTGGAAGCC
-TGTCTAGACG--
 G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

Gabpa/MA0062.2/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:AAGTCTGGAAGCC--
----CCGGAAGTGGC
 G T C A C G T A A C T G A G C T A G T C A G C T A C T G A T C G C G T A T C G A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C