Information for 2-TCTCATCCCG (Motif 4)

G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G
Reverse Opposite:
G A T C C A T G C T A G A C T G G T C A A C G T A T C G C T G A A C T G C T G A
p-value:1e-14
log p-value:-3.261e+01
Information Content per bp:1.847
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.32%
Number of Background Sequences with motif100.5
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets39.4 +/- 30.3bp
Average Position of motif in Background52.7 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TCTCATCCCG
-ATAATCCC-
 G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G
A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TCTCATCCCG
-TTAATCCC-
 G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCTCATCCCG
CTTAATCCC-
 G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCTCATCCCG
GCTAATCC--
 G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCTCATCCCG
-YTAATCCY-
 G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCTCATCCCG----
NNTAATCCNGNCNN
 G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G A C G T A C G T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

PB0098.1_Zfp410_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCTCATCCCG-----
NNNTCCATCCCATAANN
 A C G T A C G T G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

PH0139.1_Pitx3/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCTCATCCCG--
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCTCATCCCG
NYTAATCCYB
 G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCTCATCCCG
GCTAATCCCC
 G A C T A G T C G A C T A T G C C G T A A C G T A G T C A G T C G A T C C T A G
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C