Information for 12-GGAGCDGAWGCTG (Motif 15)

A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G
Reverse Opposite:
A G T C G T C A A T C G A G T C G C T A A C G T A G T C G T A C A T C G A G T C A C G T A G T C A T G C
p-value:1e-9
log p-value:-2.123e+01
Information Content per bp:1.789
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif42.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets56.5 +/- 20.9bp
Average Position of motif in Background42.9 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCDGAWGCTG
CGGAGC--------
 A C G T A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGAGCDGAWGCTG----
--AGATGCTRCTRCCHT
 A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

HINFP/MA0131.2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGAGCDGAWGCTG
-NCGCGGACGTTG
 A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G
A C G T T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

PB0124.1_Gabpa_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCDGAWGCTG-
NNNNGGGGGAAGANGG
 A C G T A C G T A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G A C G T
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGAGCDGAWGCTG
GGAAGTGAAAST-
 A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G
C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T A C G T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGAGCDGAWGCTG
CGGAAGTGAAAC--
 A C G T A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGAGCDGAWGCTG
TGGAACAGMA----
 A C G T A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCDGAWGCTG
GGGAGGACNG----
 A C G T A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GGAGCDGAWGCTG---
-AAGGKGRCGCAGGCA
 A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G A C G T A C G T A C G T
A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GGAGCDGAWGCTG--
NNNGGGHAGCAHRTGCTRCC
 A C G T A C G T A C G T A C G T A C G T A T C G A C T G C G T A A C T G T A G C C A T G A C T G G T C A C G A T C T A G A T G C A C G T A C T G A C G T A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C