Information for 5-WCAGVTGCACAGGAGS (Motif 9)

C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C
Reverse Opposite:
T A C G G T A C C G A T T A G C A G T C A G C T A C T G A G C T A C T G A T G C C G T A A C G T T A G C C A G T A C T G G C T A
p-value:1e-9
log p-value:-2.103e+01
Information Content per bp:1.695
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif47.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets61.2 +/- 18.2bp
Average Position of motif in Background55.8 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:WCAGVTGCACAGGAGS---
----GAGCACAGCAGGACA
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.67
Offset:7
Orientation:reverse strand
Alignment:WCAGVTGCACAGGAGS
-------CACAGN---
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:WCAGVTGCACAGGAGS---
----CCACACAGCAGGAGA
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:WCAGVTGCACAGGAGS---
----CCACACAGCAGGAGA
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.63
Offset:7
Orientation:forward strand
Alignment:WCAGVTGCACAGGAGS---
-------CACAGCAGGGGG
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:WCAGVTGCACAGGAGS
-----TGCCCAGNHW-
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:WCAGVTGCACAGGAGS-----
------DCHCAGCAGGRGGCC
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:WCAGVTGCACAGGAGS-----
----ATCCACAGGTGCGAAAA
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:WCAGVTGCACAGGAGS-
-----NNVVCAGCTGBN
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:WCAGVTGCACAGGAGS
------DCTCAGCAGG
 C G A T G T A C G T C A A T C G T G A C C G A T A T C G A G T C T C G A A G T C C T G A A C T G A T C G C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G