Information for 12-CAAAGCCAATTTT (Motif 10)

A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T
Reverse Opposite:
C G T A C G T A C G T A C G T A G A C T A C G T C T A G C T A G G T A C A C G T A C G T A C G T C T A G
p-value:1e-11
log p-value:-2.659e+01
Information Content per bp:1.818
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 17.3bp
Average Position of motif in Background77.4 +/- 4.8bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAAAGCCAATTTT
AAAAGTCAA----
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAAAGCCAATTTT
-TAATTTAATTA-
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T
A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAAAGCCAATTTT
-TAATTTAATTA-
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T
A C G T G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T

PH0094.1_Lhx4/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAAAGCCAATTTT----
CAAAGCTAATTAGNTTN
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T A C G T A C G T A C G T A C G T
G A T C T G C A G C T A T G C A T A C G A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A G C T G C A T C A G T G T C A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAAAGCCAATTTT
NTAATBNAATTA-
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAAAGCCAATTTT
YTAATYNRATTA-
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T

PH0108.1_Msx3/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAAAGCCAATTTT---
CAAAACCAATTAATTT
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PROP1/MA0715.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAAAGCCAATTTT
-TAATTTAATTA-
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T
A C G T G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A A C G T

IRF7/MA0772.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAAAGCCAATTTT
ACGAAAGCGAAAGT-
 A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T
G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAAAGCCAATTTT---
AAAAACCAATTAAGAA
 A G T C C G T A C G T A C G T A A C T G A G T C A G T C C G T A C T G A C G A T A C G T A C G T G C A T A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A