Information for 5-TGTTATAAAA (Motif 5)

A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A
Reverse Opposite:
C A G T G A C T G C A T G A C T T C G A G C A T G C T A C G T A T A G C T C G A
p-value:1e-11
log p-value:-2.615e+01
Information Content per bp:1.656
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif6.53%
Number of Background Sequences with motif1097.5
Percentage of Background Sequences with motif2.28%
Average Position of motif in Targets45.0 +/- 30.0bp
Average Position of motif in Background50.9 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGTTATAAAA-
-GTCATAAAAN
 A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PB0129.1_Glis2_2/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TGTTATAAAA--
AATATTAATAAAGA
 A C G T A C G T A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A A C G T A C G T
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGTTATAAAA
NCYAATAAAA
 A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGTTATAAAA-
GGTAATAAAAA
 A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TGTTATAAAA
-GCAATAAAA
 A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGTTATAAAA
AAGCCATAAAA
 A C G T A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TGTTATAAAA-------
--GTATAAAAGGCGGGG
 A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TGTTATAAAA-------
--GTATAAAAGGCGGGG
 A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0187.1_Tcf7_2/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGTTATAAAA--
CCGTATTATAAACAA
 A C G T A C G T A C G T A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGTTATAAAA-----
AATGCAATAAAATTTAT
 A C G T A C G T A G C T A T C G G C A T C G A T C G T A A G C T C T G A C G T A C T G A G T C A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T