Information for 2-SGTATTATTYATCATG (Motif 4)

A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G
Reverse Opposite:
G A T C G C T A C G A T C T A G C G T A G A C T C T G A G T C A G C T A A C G T C G T A G T C A C G A T T C G A A T G C A T G C
p-value:1e-14
log p-value:-3.285e+01
Information Content per bp:1.729
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.1 +/- 19.7bp
Average Position of motif in Background38.1 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:SGTATTATTYATCATG-
--TAGTGATCATCATTA
 A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G A C G T
A C G T A C G T G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:SGTATTATTYATCATG
--GAATATTCAT----
 A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:SGTATTATTYATCATG
--GHATATKCAT----
 A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----SGTATTATTYATCATG
TGTAGGGATTAATTGTC---
 A C G T A C G T A C G T A C G T A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:SGTATTATTYATCATG
TGAATTATGCAT----
 A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----SGTATTATTYATCATG
TGAAGGGATTAATCATC---
 A C G T A C G T A C G T A C G T A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C A C G T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:SGTATTATTYATCATG-
---NTTATTCGTCATNC
 A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G A C G T
A C G T A C G T A C G T C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

PH0125.1_Obox5_2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----SGTATTATTYATCATG
NANAGGGATTAATTATN---
 A C G T A C G T A C G T A C G T A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:SGTATTATTYATCATG--
--AGTTATTAATGAGGTC
 A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G A C G T A C G T
A C G T A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-SGTATTATTYATCATG
ATGAATWATTCATGA--
 A C G T A T C G A T C G A G C T C G T A C A G T A C G T G T C A C G A T A C G T A G C T C G T A A C G T A G T C C G T A C G A T C T A G
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T A C G T