Information for 3-CCATTCAMCA (Motif 3)

A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A
Reverse Opposite:
C G A T C T A G A C T G G C A T T A C G C G T A C G T A C G A T C T A G C T A G
p-value:1e-17
log p-value:-4.116e+01
Information Content per bp:1.686
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif12.56%
Number of Background Sequences with motif1885.5
Percentage of Background Sequences with motif3.93%
Average Position of motif in Targets50.7 +/- 25.6bp
Average Position of motif in Background50.1 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----CCATTCAMCA-
NNCATTCATTCATNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCATTCAMCA----
ACATTCATGACACG
 A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCATTCAMCA---
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CCATTCAMCA
NNGCACCTTTCTCC-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCATTCAMCA---
AATCAATTCAATAATT
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCATTCAMCA
GGCCATTAAC--
 A C G T A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCATTCAMCA--
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCATTCAMCA
YCATTAMC--
 A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCATTCAMCA
RGCCATYAATCA
 A C G T A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

TEAD4/MA0809.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCATTCAMCA
CACATTCCAT-
 A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G T A T G A C G A T C G C T A
G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T