Information for 20-ATAGAAGGCWCTT (Motif 27)

C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G C G T A A C T G T A G C A G T C A C G T C G A T A T G C A C G T G T C A C G A T
p-value:1e-8
log p-value:-1.875e+01
Information Content per bp:1.812
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif30.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets50.4 +/- 29.9bp
Average Position of motif in Background39.0 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0115.1_Nkx2-6/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATAGAAGGCWCTT------
---TAAGCCACTTAACATT
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.61
Offset:5
Orientation:forward strand
Alignment:ATAGAAGGCWCTT--
-----AASCACTCAA
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.61
Offset:6
Orientation:forward strand
Alignment:ATAGAAGGCWCTT--
------ACCACTTAA
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATAGAAGGCWCTT--
AGGGAAGTCATTTCT
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:ATAGAAGGCWCTT---
------ACCACTTGAA
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:ATAGAAGGCWCTT--
-----AAGCACTTAA
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:ATAGAAGGCWCTT------
---TAAGCCACTTGAAATT
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:ATAGAAGGCWCTT--
-----MRSCACTYAA
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATAGAAGGCWCTT------
---TAAGCCACTTGAAATT
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.59
Offset:6
Orientation:forward strand
Alignment:ATAGAAGGCWCTT--
------ACCACTTAA
 C G T A A C G T C G T A A T C G G C T A C G T A C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A