Information for 5-CHSCAGRGAC (Motif 12)

T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C
Reverse Opposite:
A C T G A G C T G T A C G A T C A G T C A C G T A C T G A T C G C G T A A C T G
p-value:1e-5
log p-value:-1.290e+01
Information Content per bp:1.522
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif6.21%
Number of Background Sequences with motif384.2
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets64.3 +/- 20.3bp
Average Position of motif in Background48.5 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CHSCAGRGAC-
TCCCNNGGGACN
 A C G T T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C A C G T
G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

EBF1/MA0154.3/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CHSCAGRGAC-
ATTCCCAAGGGAAT
 A C G T A C G T A C G T T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C A C G T
C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CHSCAGRGAC
GTCCCCAGGGGA
 A C G T A C G T T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CHSCAGRGAC--
--CCAGGAACAG
 T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C A C G T A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CHSCAGRGAC
CACAGCAGGGGG
 A C G T A C G T T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CHSCAGRGAC---
---CAAGGHCANV
 T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CHSCAGRGAC-----
ATCCACAGGTGCGAAAA
 A C G T A C G T T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C A C G T A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CHSCAGRGAC--
--NRRGGGTCTT
 T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C A C G T A C G T
A C G T A C G T A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CHSCAGRGAC--
--VCAGGTRDRY
 T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C A C G T A C G T
A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CHSCAGRGAC--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T T G A C G C A T T A G C T G A C G T C A T C A G C T A G C A T G T C G A T G A C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C