Information for 3-NSCTGACAGN (Motif 3)

T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C
Reverse Opposite:
A C T G A T G C A C G T A C T G C G A T A G T C C G T A A T C G T A G C A G C T
p-value:1e-52
log p-value:-1.212e+02
Information Content per bp:1.690
Number of Target Sequences with motif299.0
Percentage of Target Sequences with motif37.42%
Number of Background Sequences with motif7139.5
Percentage of Background Sequences with motif15.16%
Average Position of motif in Targets50.9 +/- 23.9bp
Average Position of motif in Background49.9 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:NSCTGACAGN-
-VBTGWCAGCB
 T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C A C G T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:NSCTGACAGN
-RHTGWCAR-
 T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C
A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:NSCTGACAGN
ARNTGACA--
 T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.86
Offset:2
Orientation:forward strand
Alignment:NSCTGACAGN
--TTGACAGC
 T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.85
Offset:2
Orientation:forward strand
Alignment:NSCTGACAGN
--TTGACAG-
 T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C
A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.82
Offset:2
Orientation:forward strand
Alignment:NSCTGACAGN
--TTGACAGG
 T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--NSCTGACAGN
GGTGYTGACAGS
 A C G T A C G T T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-NSCTGACAGN-----
NNATTGACAGGTGCTT
 A C G T T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C A C G T A C G T A C G T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--NSCTGACAGN-----
GATATTGACAGCTGCGT
 A C G T A C G T T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.75
Offset:2
Orientation:forward strand
Alignment:NSCTGACAGN
--TTGCCAAG
 T C G A A T C G A T G C A C G T A C T G G C T A A G T C C G T A T A C G T G A C
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G