Information for 17-CTKCTMACYAGAM (Motif 13)

A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C
Reverse Opposite:
A C T G C A G T A G T C A C G T C T A G A C T G A C G T A C T G C G T A A C T G G T A C C G T A A C T G
p-value:1e-9
log p-value:-2.144e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.0 +/- 27.6bp
Average Position of motif in Background62.5 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTKCTMACYAGAM---
GANGTTAACTAGTTTNN
 A C G T A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTKCTMACYAGAM--
AGCTGTTAACTAGCCGT
 A C G T A C G T A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

GFX(?)/Promoter/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTKCTMACYAGAM
ATTCTCGCGAGA-
 A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C
T C G A G A C T A G C T T G A C A G C T G T A C T C A G G A T C A T C G T G C A A C T G C T G A A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTKCTMACYAGAM
--GTTAACTAGN-
 A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CTKCTMACYAGAM--
-------CCAGACAG
 A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CTKCTMACYAGAM----
-------CCAGACRSVB
 A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CTKCTMACYAGAM
AATTTGCTGAC-----
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTKCTMACYAGAM--
GTTCTCGCGAGANCC
 A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C A C G T A C G T
T A C G G A C T G A C T T G A C A G C T A G T C C A T G G T A C A C T G T C G A A C T G T C G A A C G T A G T C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTKCTMACYAGAM------
--CAAATCCAGACATCACA
 A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CTKCTMACYAGAM
AAATTTGCTGACTTAGA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A C G T G T A C C G T A A G T C G A T C C G T A A C T G G C T A G T A C
G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C