Information for 15-ACTCWWGTARAAT (Motif 12)

C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A G C T A G C T C T G A A G T C C G T A C G A T C T A G C G T A A C T G A C G T
p-value:1e-10
log p-value:-2.447e+01
Information Content per bp:1.886
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.5 +/- 20.6bp
Average Position of motif in Background60.7 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACTCWWGTARAAT--
AAACCTCGTAAAATTT
 A C G T C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ACTCWWGTARAAT
--GCTCGTAAAAA
 C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T
A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ACTCWWGTARAAT--
AAAGCTCGTAAAATTT
 A C G T C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACTCWWGTARAAT
--NCYAATAAAA-
 C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T
A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ACTCWWGTARAAT---
CTACCAATAAAATTCT
 C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:6
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------ACTCWWGTARAAT
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ACTCWWGTARAAT
--CCYMATAAAA-
 C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ACTCWWGTARAAT---
AACCCAATAAAATTCG
 C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----ACTCWWGTARAAT
AGCCACTCAAG------
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:ACTCWWGTARAAT
---CCAATAAAAA
 C G T A A G T C A C G T A G T C G C A T C G A T A C T G A G C T C T G A C T G A C G T A C G T A A C G T
A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A