Information for 2-CGGGDTTGGCAGGGCC (Motif 3)

A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C
Reverse Opposite:
A C T G A C T G A T G C A G T C A G T C A C G T C A T G T A G C A G T C C G T A C G T A G C A T A G T C A G T C G T A C A T C G
p-value:1e-15
log p-value:-3.616e+01
Information Content per bp:1.814
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.6 +/- 29.0bp
Average Position of motif in Background52.7 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CGGGDTTGGCAGGGCC
-----TTGCCAAG---
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGGGDTTGGCAGGGCC--
--GGATTGACAGGTCNTT
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C A C G T A C G T
A C G T A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGGGDTTGGCAGGGCC--
--NNATTGACAGGTGCTT
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C A C G T A C G T
A C G T A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CGGGDTTGGCAGGGCC
-----TTGACAGC---
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGGDTTGGCAGGGCC
-NTGATTGACAGN---
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGGGDTTGGCAGGGCC
GGGGCTYGKCTGGGA-
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGGGDTTGGCAGGGCC--
--GTATTGACAGGTNNTT
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C A C G T A C G T
A C G T A C G T C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CGGGDTTGGCAGGGCC
-----TTGGCA-----
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CGGGDTTGGCAGGGCC
NGTAGGTTGGCATNNN-
 A C G T A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGGGDTTGGCAGGGCC
-BTGABTGACAGS---
 A T G C A C T G C T A G A C T G C G T A C G A T A C G T A C T G A T C G G T A C C G T A A C T G A C T G A T C G A G T C A G T C
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T