Information for 13-GGCAGCCAGAAAT (Motif 14)

A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G A T A T G C A C G T A C T G A C T G A T G C A C G T A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.0 +/- 27.2bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCAGCCAGAAAT--
---GGCCATAAATCA
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA5/MA0158.1/Jaspar

Match Rank:2
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GGCAGCCAGAAAT-
------CACTAATT
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGCAGCCAGAAAT---
---GGCCATAAATCAC
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGCAGCCAGAAAT---
----KCCAAAAATAGC
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGCAGCCAGAAAT--
---GGCCATAAATCA
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGCAGCCAGAAAT
-BCAGACWA----
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGCAGCCAGAAAT
--ATGCCAGACN-
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGCAGCCAGAAAT--
----GCCATAAATCA
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GGCAGCCAGAAAT---
----GCTAAAAATAGC
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GGCAGCCAGAAAT---
----DCYAAAAATAGM
 A C T G A C T G A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C