Information for 7-CATGCAGCAT (Motif 20)

G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T
Reverse Opposite:
C G T A G A C T A C T G A G T C G A C T A C T G G A T C T C G A C G A T A C T G
p-value:1e-6
log p-value:-1.547e+01
Information Content per bp:1.801
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif95.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets45.9 +/- 23.3bp
Average Position of motif in Background52.9 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0147.1_Max_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CATGCAGCAT
GTGCCACGCGACTG
 A C G T A C G T A C G T A C G T G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CATGCAGCAT
CACGCA----
 G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATGCAGCAT
GYCATCMATCAT
 A C G T A C G T G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CATGCAGCAT
TBGCACGCAA---
 A C G T A C G T A C G T G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CATGCAGCAT-
-TTGCAACATN
 G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T A C G T
A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CATGCAGCAT----
CCACACAGCAGGAGA
 A C G T G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CATGCAGCAT----
CCACACAGCAGGAGA
 A C G T G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CATGCAGCAT---
TCAGNGAGCGTGAC
 A C G T G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T A C G T A C G T A C G T
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATGCAGCAT--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

NFE2/MA0841.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CATGCAGCAT-
CATGACTCATC
 G T A C G C T A A G C T C T A G G T A C C T G A T C A G A G T C C T G A A C G T A C G T
T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C