Information for 3-ATGACTCGTGCAT (Motif 5)

G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
Reverse Opposite:
C G T A A C G T A T C G G T A C C G T A T A G C A C T G C G T A A C T G A G C T A G T C C G T A A C G T
p-value:1e-13
log p-value:-3.084e+01
Information Content per bp:1.822
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.0 +/- 21.2bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATGACTCGTGCAT
TCATGAATWATTCAT
 A C G T A C G T G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATGACTCGTGCAT--
ATGCATWATGCATRW
 G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ATGACTCGTGCAT
-TGAATTATGCAT
 G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

JDP2/MA0655.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGACTCGTGCAT
ATGACTCAT----
 G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T A C G T A C G T A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATGACTCGTGCAT
CATGACTCATC---
 A C G T G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C A C G T A C G T A C G T

JUND/MA0491.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATGACTCGTGCAT
GGTGACTCATC---
 A C G T G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C A C G T A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATGACTCGTGCAT
TGTGACTCATT---
 A C G T G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T A C G T A C G T A C G T

Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGACTCGTGCAT
GATGAGTCATCC--
 A C G T G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
C T A G T C G A G A C T A C T G C G T A A T C G C G A T T G A C C G T A A G C T G A T C G T A C A C G T A C G T

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGACTCGTGCAT
DATGASTCAT----
 A C G T G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
C A G T T G C A A C G T A C T G C G T A A T C G C G A T T G A C C G T A A C G T A C G T A C G T A C G T A C G T

JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGACTCGTGCAT
RATGASTCAT----
 A C G T G T C A A C G T A C T G C T G A T A G C A C G T G T A C A T C G A C G T A C T G A T G C C G T A A C G T
C T A G T C G A G C A T C A T G G C T A T A G C C G A T G T A C C T G A A G C T A C G T A C G T A C G T A C G T