Information for 13-CACAGCGCAA (Motif 34)

T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A
Reverse Opposite:
A G C T G A C T A T C G A G T C A C T G A G T C G C A T A T C G A G C T A T C G
p-value:1e-7
log p-value:-1.697e+01
Information Content per bp:1.652
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif11.49%
Number of Background Sequences with motif2863.2
Percentage of Background Sequences with motif6.15%
Average Position of motif in Targets42.9 +/- 25.6bp
Average Position of motif in Background48.3 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CACAGCGCAA
CACAGN----
 T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CACAGCGCAA--
GAGCACAGCAGGACA
 A C G T A C G T A C G T T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CACAGCGCAA
AAACCACAGC----
 A C G T A C G T A C G T A C G T T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CACAGCGCAA
--CAGCC---
 T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:5
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------CACAGCGCAA-
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------CACAGCGCAA-
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CACAGCGCAA
-AAACCGCAA
 T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A
A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CACAGCGCAA-
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CACAGCGCAA
AAACCACAGAN---
 A C G T A C G T A C G T A C G T T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CACAGCGCAA-
-AAACCGCAAA
 T A G C T C G A T A G C C G T A T C A G T G A C T C A G T A G C C T G A T C G A A C G T
A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A