Information for 12-TGGCTGCATTCTA (Motif 21)

A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
Reverse Opposite:
C A G T C T G A A T C G C G T A G T C A A C G T A C T G A G T C C G T A A C T G A G T C G T A C C G T A
p-value:1e-8
log p-value:-1.981e+01
Information Content per bp:1.840
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.5 +/- 18.0bp
Average Position of motif in Background38.8 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGCATTCTA
TWGTCTGV------
 A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGCATTCTA
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGGCTGCATTCTA
-NGCTN-------
 A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGCATTCTA
TTGGCA--------
 A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTGCATTCTA
NTTGGCANN------
 A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.56
Offset:-8
Orientation:forward strand
Alignment:--------TGGCTGCATTCTA
GTCATGCHTGRCTGS------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTGCATTCTA--
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TGGCTGCATTCTA
CAAGATGGCGGC------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGGCTGCATTCTA
TGATTGGCTANN-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGCATTCTA
CTGTCTGG------
 A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C G T C A A C G T A C G T A T G C A G C T G T C A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T