Information for 2-GCYGGGMAGYTCCTKC (Motif 2)

A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G G T A C C G T A A C T G A C T G C G T A T C A G A G T C A C G T A C T G A G T C A G T C A G T C C T G A A C T G A T G C
p-value:1e-11
log p-value:-2.600e+01
Information Content per bp:1.893
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.8 +/- 15.9bp
Average Position of motif in Background26.1 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCYGGGMAGYTCCTKC
---GGGAATTTCC---
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCYGGGMAGYTCCTKC
WDNCTGGGCA--------
 A C G T A C G T A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCYGGGMAGYTCCTKC
---GGGAATTTCC---
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCYGGGMAGYTCCTKC
---GGGGATTTCC---
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCYGGGMAGYTCCTKC
---GGGGATTTCC---
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCYGGGMAGYTCCTKC
--NGGGGATTTCCC--
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GCYGGGMAGYTCCTKC---
----AGATGCTRCTRCCHT
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCYGGGMAGYTCCTKC----
NNNGGGHAGCAHRTGCTRCC
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GCYGGGMAGYTCCTKC-
-------ACATCCTGNT
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCYGGGMAGYTCCTKC
TNNGGGCAG-------
 A T C G A G T C A G C T A C T G A C T G A C T G G T A C G T C A A C T G A G T C A C G T A G T C A G T C A C G T A C T G A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T