Information for 2-AATTTATCATTTT (Motif 3)

G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T
Reverse Opposite:
G C T A C G T A C T G A G T C A C A G T C T A G C G T A C G A T C G T A C G T A C G T A A C G T C A G T
p-value:1e-12
log p-value:-2.879e+01
Information Content per bp:1.765
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.5 +/- 28.3bp
Average Position of motif in Background37.3 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AATTTATCATTTT
TCATCAATCA----
 A C G T G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

PH0044.1_Homez/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AATTTATCATTTT----
AAAACATCGTTTTTAAG
 G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G

DMRT3/MA0610.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AATTTATCATTTT
AATGTATCAAT--
 G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATTTATCATTTT-
NTNTTCTTATCAGTNTN
 A C G T A C G T A C G T G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AATTTATCATTTT
GYCATCMATCAT---
 A C G T A C G T G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AATTTATCATTTT
RGCCATYAATCA----
 A C G T A C G T A C G T G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AATTTATCATTTT
AAATTAATTAATC-
 A C G T G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AATTTATCATTTT
---TAATCAATTA
 G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T
A C G T A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

ONECUT2/MA0756.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AATTTATCATTTT---
--ATTATCGATTTTTT
 G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T

GATA5/MA0766.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AATTTATCATTTT
-TCTTATCT----
 G C T A C G T A C G A T G A C T C G A T C G T A A C G T A G T C G T C A C A G T A G C T A C G T C A G T
A C G T A G C T A T G C G A C T C G A T C G T A A G C T A G T C C G A T A C G T A C G T A C G T A C G T