Information for 3-CACCGCTGGCGGCGGA (Motif 5)

A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A C T G A G T C A G T C A T C G A G T C A G T C C T G A A C T G A G T C A C T G A C T G G A C T A C T G
p-value:1e-10
log p-value:-2.442e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 18.8bp
Average Position of motif in Background44.8 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACCGCTGGCGGCGGA
DCHCAGCAGGRGGCC--
 A C G T A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CACCGCTGGCGGCGGA
NCNCAGCGGGGGGTC--
 A C G T A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACCGCTGGCGGCGGA
CACAGCGGGGGGTC--
 A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACCGCTGGCGGCGGA
NCGCAGCGGGGGGTC--
 A C G T A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

SP2/MA0516.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CACCGCTGGCGGCGGA--
---GGGNGGGGGCGGGGC
 A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A A C G T A C G T
A C G T A C G T A C G T T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

EGR1/MA0162.2/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CACCGCTGGCGGCGGA--
----GGCGGGGGCGGGGG
 A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CACCGCTGGCGGCGGA--
------RGKGGGCGGAGC
 A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CACCGCTGGCGGCGGA
CACAGCAGGGGG----
 A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:9
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CACCGCTGGCGGCGGA--
-------GGGGGCGGGGC
 A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CACCGCTGGCGGCGGA---
--NNNAAGGGGGCGGGNNN
 A G T C C G T A A G T C A G T C A C T G A G T C A G C T A C T G A C T G A T G C A C T G A C T G A G T C A C T G A C T G C T G A A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C