Information for 7-SCCTCCCAACCAGCCG (Motif 20)

A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G
Reverse Opposite:
A G T C T A C G A T C G A G T C C G A T A C T G A T C G G A C T A C G T A C T G A C T G T A C G T G C A A C T G A T C G T A C G
p-value:1e-7
log p-value:-1.714e+01
Information Content per bp:1.723
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif158.6
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets49.4 +/- 23.6bp
Average Position of motif in Background52.7 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-SCCTCCCAACCAGCCG
ACTATGCCAACCTACC-
 A C G T A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:SCCTCCCAACCAGCCG
--ATGCCAACC-----
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:SCCTCCCAACCAGCCG-
-------CAGCAGCTGN
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:4
Score:0.56
Offset:7
Orientation:forward strand
Alignment:SCCTCCCAACCAGCCG-
-------NAHCAGCTGD
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:SCCTCCCAACCAGCCG---
----GGCCYCCTGCTGDGH
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:SCCTCCCAACCAGCCG---
---------CCAGCTGTTN
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.55
Offset:8
Orientation:forward strand
Alignment:SCCTCCCAACCAGCCG
--------ANCAGCTG
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:SCCTCCCAACCAGCCG--
------CCCCCTGCTGTG
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:SCCTCCCAACCAGCCG---
-TGGACCAATCAGCACTCT
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G A C G T A C G T A C G T
A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:SCCTCCCAACCAGCCG
----SNGCACCTGCHS
 A T G C A T G C T G A C A C G T A T G C A G T C A G T C G T C A C T G A A T G C A G T C C G T A A C T G T A G C A T G C A C T G
A C G T A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C