Information for 1-AGGTAATTCA (Motif 1)

C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A
Reverse Opposite:
C G A T C T A G G C T A C T G A C G A T A C G T C G T A G T A C A T G C G C A T
p-value:1e-9
log p-value:-2.221e+01
Information Content per bp:1.747
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif9.17%
Number of Background Sequences with motif287.5
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets47.6 +/- 20.8bp
Average Position of motif in Background50.5 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AGGTAATTCA-------
---ACATTCATGACACG
 C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGGTAATTCA----
GGACTGAATTCATGCC
 A C G T A C G T C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGGTAATTCA------
AATCAATTCAATAATT
 C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGTAATTCA----
GGAGGTCATTAATTAT
 A C G T A C G T C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGGTAATTCA-
TGGAGGTAATTAAC
 A C G T A C G T A C G T C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGGTAATTCA------
GACCACATTCATACAAT
 A C G T C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGGTAATTCA----
NNCATTCATTCATNNN
 A C G T A C G T C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PH0051.1_Hoxa4/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGGTAATTCA-----
CNAGTTAATTAATAANN
 A C G T A C G T C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T A C G T
T G A C T C G A G T C A T C A G G C A T G A C T G T C A C G T A G A C T A C G T C T G A C G T A A G C T C T G A C T G A G A C T G A T C

PH0128.1_Otp/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGTAATTCA----
CGTAATTAATTAATTGG
 A C G T A C G T A C G T C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T
T G A C T C A G G A C T C G T A T C G A G A C T G A C T T C G A C T G A A G C T A C G T C T G A C T G A A G C T C A G T C A T G A C T G

PH0176.1_Vsx1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGTAATTCA-----
CGAGTTAATTAATAATT
 A C G T A C G T C G T A A T C G C A T G C G A T T G C A C G T A A G C T C G A T G A T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G T C A C T A G G A C T G A C T G T C A C G T A G A C T A C G T C T G A C T G A G A C T C T G A T G C A G C A T A G C T