Information for 12-CCTSCAGCAGGCY (Motif 12)

A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T
Reverse Opposite:
C T G A A C T G A T G C G T A C C G A T T A C G G A T C C G A T A C T G A T C G C G T A T C A G A T C G
p-value:1e-10
log p-value:-2.371e+01
Information Content per bp:1.632
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.54%
Number of Background Sequences with motif592.1
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets51.3 +/- 28.6bp
Average Position of motif in Background51.1 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.68
Offset:-8
Orientation:forward strand
Alignment:--------CCTSCAGCAGGCY
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CCTSCAGCAGGCY-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCTSCAGCAGGCY
GGCCYCCTGCTGDGH
 A C G T A C G T A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCTSCAGCAGGCY
--ANCAGCTG---
 A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCTSCAGCAGGCY---
GCCTCCTCCMTCWGACTGKS
 A C G T A C G T A C G T A C G T A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTSCAGCAGGCY
-CAGCAGCTGN--
 A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CCTSCAGCAGGCY-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCTSCAGCAGGCY
---VCAGCTGBNN
 A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T
A C G T A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCTSCAGCAGGCY-
--NVCAGCTGBBNN
 A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T A C G T
A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTSCAGCAGGCY
-NNGCAGCTGTC-
 A T G C A G T C G C A T A T G C G T A C G C T A C T A G A T G C C G T A C A T G T A C G T G A C G A C T
A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T