Information for 5-TTGACATGCA (Motif 6)

A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A
Reverse Opposite:
C G A T A C T G A T G C G C T A C A G T A C T G A C G T T A G C G C T A T C G A
p-value:1e-58
log p-value:-1.355e+02
Information Content per bp:1.467
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif10.09%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets46.5 +/- 28.3bp
Average Position of motif in Background52.7 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TTGACATGCA---
CTTTGTTATGCAAAT
 A C G T A C G T A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A A C G T A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTGACATGCA---
CATTGTTATGCAAAT
 A C G T A C G T A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A A C G T A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTGACATGCA-
-TBGCACGCAA
 A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTGACATGCA
TTGACAGG--
 A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTGACATGCA------
---ATATGCAAATNNN
 A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTGACATGCA-
SCTGTCAVTCAV
 A C G T A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTGACATGCA------
GACCACATTCATACAAT
 A C G T A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTGACATGCA
TTGACAG---
 A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTGACATGCA
TTGACAGC--
 A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTGACATGCA---
---ATATGCAAAT
 A G C T C G A T A T C G T G C A T G A C G T C A C A G T T A C G T G A C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T