Information for 25-AGTGCGTTAG (Motif 27)

C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
Reverse Opposite:
T A G C G A C T T G C A T G C A T A G C C T A G T A G C G C T A A T G C G A C T
p-value:1e-8
log p-value:-2.056e+01
Information Content per bp:1.549
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif2.03%
Average Position of motif in Targets47.1 +/- 28.4bp
Average Position of motif in Background64.4 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCGTTAG
TTAAGTGCTT---
 A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGTGCGTTAG
TTRAGTGSYK---
 A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCGTTAG
TTGAGTGSTT---
 A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGTGCGTTAG
NTCAAGTGG-----
 A C G T A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGTGCGTTAG
BTBRAGTGSN----
 A C G T A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGTGCGTTAG
NTCAAGTGGN----
 A C G T A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGTGCGTTAG
CTYRAGTGSY----
 A C G T A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGCGTTAG
AATNTTAAGTGGNTNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGCGTTAG
AATTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGTGCGTTAG
AAGAGGATTAG
 A C G T C T G A T A C G C G A T A T C G G A T C A T C G A C G T A C G T C T G A A T C G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G