Information for 12-GTTGCCGAGAAAC (Motif 17)

A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C
Reverse Opposite:
A T C G A C G T A C G T A C G T A G T C A G C T A T G C A C T G A T C G G A T C G C T A G C T A A T G C
p-value:1e-11
log p-value:-2.587e+01
Information Content per bp:1.744
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif64.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets35.2 +/- 19.2bp
Average Position of motif in Background52.5 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCGAGAAAC-
TGTTKCCTAGCAACM
 A C G T A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GTTGCCGAGAAAC--
---SCCTAGCAACAG
 A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GTTGCCGAGAAAC---
-CCGCATAGCAACGGA
 A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C A C G T A C G T A C G T
A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

STAT1/MA0137.3/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTTGCCGAGAAAC
-TTTCCTGGAAA-
 A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C
A C G T G A C T A C G T A G C T G T A C A G T C G A C T C T A G A C T G T G C A C T G A T G C A A C G T

STAT3/MA0144.2/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GTTGCCGAGAAAC
-TTTCCCAGAAN-
 A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C
A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTTGCCGAGAAAC
ATTTCCAAGAA--
 A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T

Stat4/MA0518.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTTGCCGAGAAAC--
-TTTCCAGGAAATGG
 A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C A C G T A C G T
A C G T A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTTGCCGAGAAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTTGCCGAGAAAC
NTTTCCNGGAAA-
 A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C
T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTGCCGAGAAAC---
-TACCATAGCAACGGT
 A T C G C G A T C A G T C T A G A T G C G T A C A T C G C T G A A C T G G T C A C G T A C G T A A T G C A C G T A C G T A C G T
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T