Information for 15-CAAGAAATCA (Motif 17)

A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C G T C G A T A G T C A C G T A C G T A C T G
p-value:1e-7
log p-value:-1.795e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.4 +/- 18.0bp
Average Position of motif in Background27.8 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CAAGAAATCA-----
AAGGCGAAATCATCGCA
 A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAAGAAATCA
GCCATAAATCA
 A C G T A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAAGAAATCA
GGCCATAAATCA
 A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAAGAAATCA-
GGCCATAAATCAC
 A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CAAGAAATCA
NACAGGAAAT--
 A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CAAGAAATCA---
---CAAATCACTG
 A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAAGAAATCA
GGCCATAAATCA
 A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CAAGAAATCA----
GACAGAGATATCAGTGT
 A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAAGAAATCA
NACAGGAAAT--
 A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAAGAAATCA
TCATCAATCA
 A G T C C G T A C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A